Hinweis: Die „Schnellsuche“ findet nur Text in den angezeigten Feldern; nicht in Abstracts oder Schlagwörtern. Der Suchbegriff muss mindestens 3 Buchstaben lang sein.
2017
- Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems. BMC Systems Biology 11 (1), 2017 mehr… BibTeX Volltext ( DOI )
- Pulmonary microRNA profiles identify involvement of Creb1 and Sec14l3 in bronchial epithelial changes in allergic asthma. Scientific Reports 7, 2017, 46026 mehr… BibTeX Volltext ( DOI )
- cgCorrect: a method to correct for confounding cell–cell variation due to cell growth in single-cell transcriptomics. Physical Biology 14 (3), 2017, 036001 mehr… BibTeX Volltext ( DOI )
- Prospective identification of hematopoietic lineage choice by deep learning. Nature Methods 14 (4), 2017, 403-406 mehr… BibTeX Volltext ( DOI )
- Model-based branching point detection in single-cell data by K-branches clustering. Bioinformatics, 2017 mehr… BibTeX Volltext ( DOI )
- Calcium-regulatory proteins as modulators of chemotherapy in human neuroblastoma. Oncotarget, 2017 mehr… BibTeX Volltext ( DOI )
- Prediction of type 1 diabetes using a genetic risk model in the Diabetes Autoimmunity Study in the Young. Pediatric Diabetes, 2017 mehr… BibTeX Volltext ( DOI )
- Scalable Parameter Estimation for Genome-Scale Biochemical Reaction Networks. PLOS Computational Biology 13 (1), 2017, e1005331 mehr… BibTeX Volltext ( DOI )
- fastER: a user-friendly tool for ultrafast and robust cell segmentation in large-scale microscopy. Bioinformatics 33 (13), 2017, 2020-2028 mehr… BibTeX Volltext ( DOI )
- Parallelization and High-Performance Computing Enables Automated Statistical Inference of Multi-scale Models. Cell Systems 4 (2), 2017, 194-206.e9 mehr… BibTeX Volltext ( DOI )
- Identification of a plasma miRNA biomarker signature for allergic asthma: A translational approach. Allergy, 2017 mehr… BibTeX Volltext ( DOI )
- A BaSiC tool for background and shading correction of optical microscopy images. Nature Communications 8, 2017, 14836 mehr… BibTeX Volltext ( DOI )
- AURKA, DLGAP5, TPX2, KIF11 and CKAP5: Five specific mitosis-associated genes correlate with poor prognosis for non-small cell lung cancer patients. International Journal of Oncology, 2017 mehr… BibTeX Volltext ( DOI )
- Inhibition of fat cell differentiation in 3T3-L1 pre-adipocytes by all-trans retinoic acid: Integrative analysis of transcriptomic and phenotypic data. Biomolecular Detection and Quantification 11, 2017, 31-44 mehr… BibTeX Volltext ( DOI )
2016
- Combinatorial Histone Acetylation Patterns Are Generated by Motif-Specific Reactions. Cell Systems, 2016, 49-58 mehr… BibTeX Volltext ( DOI )
- Label-free cell cycle analysis for high-throughput imaging flow cytometry. Nature Communications 7, 2016, 10256 mehr… BibTeX Volltext ( DOI )
- Analysis of Cell Lineage Trees by Exact Bayesian Inference Identifies Negative Autoregulation of Nanog in Mouse Embryonic Stem Cells. Cell Systems 3 (5), 2016, 480-490.e13 mehr… BibTeX Volltext ( DOI )
- Tailored parameter optimization methods for ordinary differential equation models with steady-state constraints. BMC Systems Biology 10 (1), 2016 mehr… BibTeX Volltext ( DOI )
- Parameter estimation for dynamical systems with discrete events and logical operations. Bioinformatics, 2016, btw764 mehr… BibTeX Volltext ( DOI )
- Inference for Stochastic Chemical Kinetics Using Moment Equations and System Size Expansion. PLOS Computational Biology 12 (7), 2016, e1005030 mehr… BibTeX Volltext ( DOI )
- A novel molecular disease classifier for psoriasis and eczema. Experimental Dermatology 25 (10), 2016, 767-774 mehr… BibTeX Volltext ( DOI )
- MEMO: multi-experiment mixture model analysis of censored data. Bioinformatics 32 (16), 2016, 2464-2472 mehr… BibTeX Volltext ( DOI )
- Diffusion pseudotime robustly reconstructs lineage branching. Nature Methods 13 (10), 2016, 845-848 mehr… BibTeX Volltext ( DOI )
- Software tools for single-cell tracking and quantification of cellular and molecular properties. Nature Biotechnology 34 (7), 2016, 703-706 mehr… BibTeX Volltext ( DOI )
- Early myeloid lineage choice is not initiated by random PU.1 to GATA1 protein ratios. Nature 535 (7611), 2016, 299-302 mehr… BibTeX Volltext ( DOI )
- Epigenetic germline inheritance of diet-induced obesity and insulin resistance. Nature Genetics 48 (5), 2016, 497-499 mehr… BibTeX Volltext ( DOI )
- Pitchfork and Gprasp2 Target Smoothened to the Primary Cilium for Hedgehog Pathway Activation. PLOS ONE 11, 2016, e0149477 mehr… BibTeX Volltext ( DOI )
- CERENA: ChEmical REaction Network Analyzer—A Toolbox for the Simulation and Analysis of Stochastic Chemical Kinetics. PLOS ONE 11, 2016, e0146732 mehr… BibTeX Volltext ( DOI )
- Inferring catalysis in biological systems. IET Systems Biology 10 (6), 2016, 210-218 mehr… BibTeX Volltext ( DOI )
- Dynamic landscape of pancreatic carcinogenesis reveals early molecular networks of malignancy. Gut, 2016, gutjnl-2015-310913 mehr… BibTeX Volltext ( DOI )
- A computational model to predict severity of atopic eczema from 30 serum proteins. Journal of Allergy and Clinical Immunology 138 (4), 2016, 1207-1210.e2 mehr… BibTeX Volltext ( DOI )
- Computational approaches for systems metabolomics. Current Opinion in Biotechnology 39, 2016, 198-206 mehr… BibTeX Volltext ( DOI )
- Unbiased Prediction and Feature Selection in High-Dimensional Survival Regression. Journal of Computational Biology 23, 2016, 279-290 mehr… BibTeX Volltext ( DOI )
- Lactation is associated with altered metabolomic signatures in women with gestational diabetes. Diabetologia 59 (10), 2016, 2193-2202 mehr… BibTeX Volltext ( DOI )
- miTALOS v2: Analyzing Tissue Specific microRNA Function. PLOS ONE 11, 2016, e0151771 mehr… BibTeX Volltext ( DOI )
- Metabolomics reveals effects of maternal smoking on endogenous metabolites from lipid metabolism in cord blood of newborns. Metabolomics 12, 2016 mehr… BibTeX Volltext ( DOI )
- Von lernfähigen Maschinen lernen. Laborjournal (7-8), 2016, 59-61 mehr… BibTeX
- TALEN/CRISPR-mediated engineering of a promoterless anti-viral RNAi hairpin into an endogenous miRNA locus. Nucleic Acids Research 45 (1), 2016, e3-e3 mehr… BibTeX Volltext ( DOI )
- MicroRNA-138 promotes acquired alkylator resistance in glioblastoma by targeting the Bcl-2-interacting mediator BIM. Oncotarget 7 (11), 2016, 12937-12950 mehr… BibTeX Volltext ( DOI )
- Editorial overview: Systems biology-the intersection of experiments and computation, underpinning biotechnology. Current Opinion in Biotechnology 39, 2016, iv-vi mehr… BibTeX Volltext ( DOI )
- Clinical impact of GATA2 mutations in acute myeloid leukemia patients harboring CEBPA mutations: a study of the AML study group. Leukemia 30 (11), 2016, 2248-2250 mehr… BibTeX Volltext ( DOI )
- The global gene expression profile of the secondary transition during pancreatic development. Mechanisms of Development 139, 2016, 51-64 mehr… BibTeX Volltext ( DOI )
- Peptide serum markers in islet autoantibody-positive children. Diabetologia 60 (2), 2016, 287-295 mehr… BibTeX Volltext ( DOI )
2015
- destiny: diffusion maps for large-scale single-cell data in R. Bioinformatics 32 (8), 2015, 1241-1243 mehr… BibTeX Volltext ( DOI )
- Live imaging of adult neural stem cell behavior in the intact and injured zebrafish brain. Science 348 (6236), 2015, 789-793 mehr… BibTeX Volltext ( DOI )
- The Human Blood Metabolome-Transcriptome Interface. PLoS Genet 11, 2015, e1005274 mehr… BibTeX Volltext ( DOI )
- Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells. Nat Biotechnol 33, 2015, 155-160 mehr… BibTeX Volltext ( DOI )
- Fast clonal expansion and limited neural stem cell self-renewal in the adult subependymal zone. Nature Neuroscience 18, 2015, 490-492 mehr… BibTeX Volltext ( DOI )
- Metabolomics screening identifies reduced L-carnitine to be associated with progressive emphysema. Clinical Science 130, 2015, 273-287 mehr… BibTeX Volltext ( DOI )
- Network plasticity of pluripotency transcription factors in embryonic stem cells. Nature Cell Biology 17 (10), 2015, 1235-1246 mehr… BibTeX Volltext ( DOI )
- Diffusion maps for high-dimensional single-cell analysis of differentiation data. Bioinformatics, 2015 mehr… BibTeX Volltext ( DOI )
- Data-driven modelling of biological multi-scale processes. Journal of Coupled Systems and Multiscale Dynamics, 2015 mehr… BibTeX Volltext ( DOI )
- A Critical Period for Postnatal Adaptive Plasticity in a Model of Motor Axon Miswiring. PLOS ONE 10, 2015, e0123643 mehr… BibTeX Volltext ( DOI )
- Bayesian Model Selection Methods and Their Application to Biological ODE Systems. In: Uncertainty in Biology. Springer Science + Business Media, 2015 mehr… BibTeX Volltext ( DOI )
- An adaptive scheduling scheme for calculating Bayes factors with thermodynamic integration using Simpson’s rule. Statistics and Computing, 2015 mehr… BibTeX Volltext ( DOI )
- Model selection using limiting distributions of second-order blind source separation algorithms. Signal Processing 113, 2015, 95-103 mehr… BibTeX Volltext ( DOI )
- An Affine Equivariant Robust Second-Order BSS Method. 2015, 10.1007/978-3-319-22482-4_38 (anderer Eintrag) mehr… BibTeX Volltext ( DOI )
- Identifying latent dynamic components in biological systems. IET Systems Biology, 2015 mehr… BibTeX Volltext ( DOI )
- A subset of metastatic pancreatic ductal adenocarcinomas depends quantitatively on oncogenic Kras/Mek/Erk-induced hyperactive mTOR signalling. Gut, 2015 mehr… BibTeX Volltext ( DOI )
- Metabolism gene signatures and surgical site infections in abdominal surgery. International Journal of Surgery 14, 2015, 67-74 mehr… BibTeX Volltext ( DOI )
- Gender-specific pathway differences in the human serum metabolome. Metabolomics, 2015 mehr… BibTeX Volltext ( DOI )
- Quantification of regenerative potential in primary human mammary epithelial cells. Development, 2015 mehr… BibTeX Volltext ( DOI )
- Approximate Bayesian Computation for Stochastic Single-Cell Time-Lapse Data Using Multivariate Test Statistics. In: Computational Methods in Systems Biology. Springer Science + Business Media, 2015 mehr… BibTeX Volltext ( DOI )
- Transcriptional Mechanisms of Proneural Factors and REST in Regulating Neuronal Reprogramming of Astrocytes. Cell Stem Cell 17, 2015, 74-88 mehr… BibTeX Volltext ( DOI )
- Integrative Analysis of MicroRNA and mRNA Data Reveals an Orchestrated Function of MicroRNAs in Skeletal Myocyte Differentiation in Response to TNF-α or IGF1. PLOS ONE 10, 2015, e0135284 mehr… BibTeX Volltext ( DOI )
- Separation of Uncorrelated Stationary time series using Autocovariance Matrices. Journal of Time Series Analysis, 2015, n/a-n/a mehr… BibTeX Volltext ( DOI )
- Decoding the regulatory network of early blood development from single-cell gene expression measurements. Nat Biotechnol 33, 2015, 269-276 mehr… BibTeX Volltext ( DOI )
- Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer. Molecular Cancer 14, 2015 mehr… BibTeX Volltext ( DOI )
- Erratum to: Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer. Molecular Cancer 14, 2015 mehr… BibTeX Volltext ( DOI )
- Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data. Bioinformatics 31 (12), 2015, i89-i96 mehr… BibTeX Volltext ( DOI )
- SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins. RNA Biology 12, 2015, 998-1009 mehr… BibTeX Volltext ( DOI )
- Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems: Fig. 1. Bioinformatics, 2015, btv405 mehr… BibTeX Volltext ( DOI )
- Atrx promotes heterochromatin formation at retrotransposons. EMBO reports 16, 2015, 836-850 mehr… BibTeX Volltext ( DOI )
- MicroRNA-Target Network Inference and Local Network Enrichment Analysis Identify Two microRNA Clusters with Distinct Functions in Head and Neck Squamous Cell Carcinoma. IJMS 16 (12), 2015, 30204-30222 mehr… BibTeX Volltext ( DOI )
- Stem-Cell-like Properties and Epithelial Plasticity Arise as Stable Traits after Transient Twist1 Activation. Cell Reports 10, 2015, 131-139 mehr… BibTeX Volltext ( DOI )
- Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy. BMC Systems Biology, 2015 mehr… BibTeX Volltext ( DOI )
- Opposing effects of allogrooming on disease transmission in ant societies. Philosophical Transactions of the Royal Society B: Biological Sciences 370 (1669), 2015, 20140108-20140108 mehr… BibTeX Volltext ( DOI )
- Multi-omic signature of body weight change: results from a population-based cohort study. BMC Medicine 13, 2015 mehr… BibTeX Volltext ( DOI )
- Anatomic-landmark detection using graphical context modelling. 12th International Symposium on Biomedical Imaging, New York, USA, April 16-19, 2015, 2015, 1304-1307 mehr… BibTeX Volltext ( DOI )
- Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations. Cell Stem Cell 16, 2015, 712-724 mehr… BibTeX Volltext ( DOI )
- Interleukin-4 and interferon-γ orchestrate an epithelial polarization in the airways. Mucosal Immunology 9 (4), 2015, 917-926 mehr… BibTeX Volltext ( DOI )
2014
- Parameterizing cell-to-cell regulatory heterogeneities via stochastic transcriptional profiles. Proceedings of the National Academy of Sciences 111, 2014, E626-E635 mehr… BibTeX Volltext ( DOI )
- Subtoxic concentrations of benzo[a]pyrene induce metabolic changes and oxidative stress in non-activated and affect the mTOR pathway in activated Jurkat T cells. Journal of Integrated OMICS 4 (1), 2014, 11-20 mehr… BibTeX Volltext ( DOI )
- Probabilistic PCA of censored data: accounting for uncertainties in the visualization of high-throughput single-cell qPCR data. Bioinformatics 30 (13), 2014, 1867-1875 mehr… BibTeX Volltext ( DOI )
- Network-Based Approach for Analyzing Intra- and Interfluid Metabolite Associations in Human Blood, Urine, and Saliva. J. Proteome Res., 2014, 141209141645008 mehr… BibTeX Volltext ( DOI )
- MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data. BMC Bioinformatics 15, 2014, 240 mehr… BibTeX Volltext ( DOI )
- Radial Basis Function Approximations of Bayesian Parameter Posterior Densities for Uncertainty Analysis. 2014, 10.1007/978-3-319-12982-2_6 (anderer Eintrag) mehr… BibTeX Volltext ( DOI )
- Uncertainty Analysis for Non-identifiable Dynamical Systems: Profile Likelihoods, Bootstrapping and More. 2014, 10.1007/978-3-319-12982-2_5 (anderer Eintrag) mehr… BibTeX Volltext ( DOI )
- ODE Constrained Mixture Modelling: A Method for Unraveling Subpopulation Structures and Dynamics. PLoS Computational Biology 10, 2014, e1003686 mehr… BibTeX Volltext ( DOI )
- Single-cell analysis: Biology at high resolution. Separation - Science & Applications (34), 2014, 24-26 mehr… BibTeX
- Einzelzellanalysen: Biologie in Hochauflösung. GIT Labor-Fachzeitschrift (9), 2014, 28-30 mehr… BibTeX
- Bayesian blind source separation applied to the lymphocyte pathway. Proceedings, 201421st International Conference on Computational Statistics (COMPSTAT2014), 625-632 mehr… BibTeX
- Bayesian Blind Source Separation for Data with Network Structure. Journal of Computational Biology 21 (11), 2014, 855-865 mehr… BibTeX Volltext ( DOI )
- Modeling of stochastic biological processes with non-polynomial propensities using non-central conditional moment equation. 19th World Congress of the International Federation of Automatic Control, 2014 mehr… BibTeX
- Centroid Clustering of Cellular Lineage Trees. 2014, 10.1007/978-3-319-10265-8_2 (anderer Eintrag) mehr… BibTeX Volltext ( DOI )
- Mouse IDGenes: a reference database for genetic interactions in the developing mouse brain. Database 2014, 2014, bau083-bau083 mehr… BibTeX Volltext ( DOI )
- Posttranscriptional Regulatory Networks: From Expression Profiling to Integrative Analysis of mRNA and MicroRNA Data. 2014, 10.1007/978-1-4939-0733-5_15 (anderer Eintrag) mehr… BibTeX Volltext ( DOI )
- Intraindividual genome expression analysis reveals a specific molecular signature of psoriasis and eczema. Science Translational Medicine (244), 2014, 244ra90-244ra90 mehr… BibTeX Volltext ( DOI )
- Allergic Contact Dermatitis in Psoriasis Patients: Typical, Delayed, and Non-Interacting. PLoS ONE, 2014, e101814 mehr… BibTeX Volltext ( DOI )
- Novel genetic associations with serum level metabolites identified by phenotype set enrichment analyses. Human Molecular Genetics 23 (21), 2014, 5847-5857 mehr… BibTeX Volltext ( DOI )
- miR-23a-3p Causes Cellular Senescence by Targeting Hyaluronan Synthase 2: Possible Implication for Skin Aging. J Investig Dermatol 135, 2014, 369-377 mehr… BibTeX Volltext ( DOI )
- RAMONA: a Web application for gene set analysis on multilevel omics data. Bioinformatics 31, 2014, 128-130 mehr… BibTeX Volltext ( DOI )
- An atlas of genetic influences on human blood metabolites. Nat Genet 46, 2014, 543-550 mehr… BibTeX Volltext ( DOI )
- Cytokine-Regulated GADD45G Induces Differentiation and Lineage Selection in Hematopoietic Stem Cells. Stem Cell Reports, 2014, 34-43 mehr… BibTeX Volltext ( DOI )
- Hypothalamic miR-103 Protects from Hyperphagic Obesity in Mice. Journal of Neuroscience 34 (32), 2014, 10659-10674 mehr… BibTeX Volltext ( DOI )
- Proteome-wide analysis reveals an age-associated cellular phenotype of in situ aged human fibroblasts. Aging-US (6), 2014, 856-878 mehr… BibTeX
- Erratum to: Feature ranking of type 1 diabetes susceptibility genes improves prediction of type 1 diabetes. Diabetologia 58, 2014, 206-206 mehr… BibTeX Volltext ( DOI )
- Feature ranking of type 1 diabetes susceptibility genes improves prediction of type 1 diabetes. Diabetologia 57 (12), 2014, 2521-2529 mehr… BibTeX Volltext ( DOI )
- miR-335 promotes mesendodermal lineage segregation and shapes a transcription factor gradient in the endoderm. Development 141, 2014, 514-525 mehr… BibTeX Volltext ( DOI )
2013
- Metabolite profiling reveals new insights into the regulation of serum urate in humans. Metabolomics 10, 2013, 141-151 mehr… BibTeX Volltext ( DOI )
- Metabolomic profiles in individuals with negative affectivity and social inhibition: A population-based study of Type D personality. Psychoneuroendocrinology 38 (8), 2013, 1299-1309 mehr… BibTeX
- Wound-healing growth factor, basic FGF, induces Erk1/2-dependent mechanical hyperalgesia. Pain 154 (10), 2013, 2216-2226 mehr… BibTeX
- Live imaging of astrocyte responses to acute injury reveals selective juxtavascular proliferation. Nat. Neurosci. 16 (5), 2013, 580-586 mehr… BibTeX
- Statistical methods for the analysis of high-throughput metabolomics data. Comp. Struc. Biotech. J. 4 (5), 2013 mehr… BibTeX
- A strategy to find gene combinations that identify children who progress rapidly to type 1 diabetes after islet autoantibody seroconversion. Acta Diabetol., 2013, 10.1007/s00592-013-0526-2 mehr… BibTeX
- An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy. BMC Bioinformatics 14 (1), 2013 mehr… BibTeX
- Method of conditional moments (MCM) for the Chemical Master Equation. Journal of Mathematical Biology 69, 2013, 687-735 mehr… BibTeX Volltext ( DOI )
- Modeling of 2D diffusion processes based on microscopy data: Parameter estimation and practical identifiability analysis. , Biomed Central, 2013 mehr… BibTeX
- Sharpening of expression domains induced by transcription and microRNA regulation within a spatio-temporal model of mid-hindbrain boundary formation. BMC Syst. Biol. 7, 2013 mehr… BibTeX
- High-dimensional Bayesian parameter estimation: Case study for a model of JAK2/STAT5 signaling. Math. Biosci. 246 (2), 2013, 293-304 mehr… BibTeX
- Parameter estimation for stochastic biochemical processes: A comparison of moment equation and fintie state projection. , Tampere International Center for Signal Processing, 2013 mehr… BibTeX
- Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis. Nat. Cell Biol. 15 (4), 2013, 363-372 mehr… BibTeX
- Joining forces of Bayesian and frequentist methodology: A study for inference in the presence of non-identiability. Philos. Transact. R. Soc. A - Math. Phys. Eng. Sci. 371 (1984), 2013 mehr… BibTeX
- Lessons learned from quantitative dynamical modeling in systems biology. PLoS One 8 (9), 2013 mehr… BibTeX
- Systematic complexity reduction of signaling models and application to a CD95 signaling model for apoptosis. In: Springer, 2013, 57-84 mehr… BibTeX
- Integrative genetic and metabolite profiling analysis suggests altered phosphatidylcholine metabolism in asthma. Allergy 68 (5), 2013, 629-636 mehr… BibTeX
- The human transcriptome is enriched for miRNA-binding sites located in cooperativity-permitting distance. RNA Biol. 10 (7), 2013, 1125-1135 mehr… BibTeX
- A modular framework for gene set analysis integrating multilevel omics data. Nucleic Acids Res. 41 (21), 2013, 9622-9633 mehr… BibTeX
- Rejoinder on 'A vine-copula based adaptive MCMC sampler for efficient inference of dynamical systems". Bayesian Anal. 8 (1), 2013, 33-42 mehr… BibTeX
- A vine-copula based adaptive MCMC sampler for efficient inference of dynamical systems. Bayesian Anal. 8 (1), 2013, 1-22 mehr… BibTeX
- Visualizing edge-edge relations in graphs. , 2013, 201-208 mehr… BibTeX
- Truth-content and phase transitions of random boolean networks with generic logics. SIAM J. Appl. Dyn. Syst. 12 (1), 2013, 315-351 mehr… BibTeX
- Effects of smoking and smoking cessation on human serum metabolite profile: Results from the KORA cohort study. BMC Med. 11 (1), 2013 mehr… BibTeX
2012
- The Sox17-mCherry fusion mouse line allows visualization of endoderm and vascular endothelial development. Genesis 50 (6), 2012, 496-505 mehr… BibTeX
- A novel approach for resolving differences in single-cell gene expression patterns from zygote to blastocyst. Bioinformatics 28 (18), 2012, i626-i632 mehr… BibTeX
- Specific temperature-induced perturbations of secondary mRNA structures are associated with the cold-adapted temperature-sensitive phenotype of influenza A virus. RNA Biol. 9 (10), 2012, 1266-1274 mehr… BibTeX
- Preface. Lecture Notes Comp. Sci. 7191, 2012, V-VII mehr… BibTeX
- Modularity maximization and tree clustering: Novel ways to determine effective geographic borders. In: Springer, 2012, 169-208 mehr… BibTeX
- ICA over finite fields - separability and algorithms. Signal Process. 92 (8), 2012, 1796-1808 mehr… BibTeX
- Uniqueness of linear factorizations into independent subspaces. J. Multivar. Anal. 112, 2012, 48-62 mehr… BibTeX
- To infinity and beyond: On ICA over Hilbert Spaces. , Springer, 2012 mehr… BibTeX
- Bayesian inference of latent causes in gene regulatory dynamics. , Springer, 2012 mehr… BibTeX
- Blind source separation using latent gaussian graphical models. , Tampere International Center for Signal Processing, 2012 mehr… BibTeX
- Body fat free mass is associated with the serum metabolite profile in a population-based study. PLoS One 7 (6), 2012 mehr… BibTeX
- Social transfer of pathogenic fungus promotes active immunisation in ant colonies. PLoS Biol. 10 (4), 2012 mehr… BibTeX
- The dynamic range of the human metabolome revealed by challenges. Faseb J. 26 (6), 2012, 2607-2619 mehr… BibTeX
- Systems biology meets metabolism. In: Springer, 2012, 281-313 mehr… BibTeX
- Mining the unknown: A systems approach to metabolite identification combining genetic and metabolic information. PLoS Genet. 8 (10), 2012 mehr… BibTeX
- Bayesian independent component analysis recovers pathway signatures from blood metabolomics data. J. Proteome Res. 11 (8), 2012, 4120-4131 mehr… BibTeX
- An ensemble approach for inferring semi-quantitative regulatory dynamics for the differentiation of mouse embryonic stem cells using prior knowledge. In: Springer, 2012, 247-260 mehr… BibTeX
- Multi-scale modeling of GMP differentiation based on single-cell genealogies. FEBS J. 279 (18), 2012, 3488-3500 mehr… BibTeX
- Uncertain gene regulatory networks simplified by gramian-based approach. , CSREA Press, 2012 mehr… BibTeX
- Joint diagonalization of several scatter matrices for ICA. , Springer, 2012 mehr… BibTeX
- A unilateral negative feedback loop between miR-200 microRNAs and Sox2/E2F3 controls neural progenitor cell-cycle exit and differentiation. J. Neurosci. 32 (38), 2012, 13292-13308 mehr… BibTeX
- On the hypothesis-free testing of metabolite ratios in genome-wide and metabolome-wide association studies. BMC Bioinformatics 13, 2012 mehr… BibTeX
- Measuring non-Gaussianity by phi-transformed and fuzzy histograms. Advances in Artificial Neural Systems 2012, 2012 mehr… BibTeX
- PhenomiR: MicroRNAs in human diseases and biological processes. Methods Mol. Biol. 822, 2012, 249-260 mehr… BibTeX
- Bayesian model selection validates a biokinetic model for zirconium processing in humans. BMC Syst. Biol. 6, 2012 mehr… BibTeX
- Identification and quantification of 1-hydroxybutene-2-yl mercapturic acid in human urine by UPLC- HILIC-MS/MS as a novel biomarker for 1,3-butadiene exposure. Chem. Res. Toxicol. 25 (8), 2012, 1565-1567 mehr… BibTeX
- Stability and multiattractor dynamics of a toggle switch based on a two-stage model of stochastic gene expression. Biophys. J. 102 (1), 2012, 19-29 mehr… BibTeX
- Bayesian fuzzy clustering of colored graphs. , Springer, 2012 mehr… BibTeX
- A strategy for combining minor genetic susceptibility genes to improve prediction of disease in type 1 diabetes. Genes Immun. 13 (7), 2012, 549-555 mehr… BibTeX
2011
- The Heckscher-Ohlin model and the network structure of international trade. Int. Rev. Econom. Finance 20 (2), 2011, 135-145 mehr… BibTeX
- Are we to integrate previous information into microarray analyses? Interpretation of a Lmx1b-knockout experiment. In: Bentham Science Publishers, 2011, 157-170 mehr… BibTeX
- Vertex centralities in input-output networks reveal the structure of modern economies. Phys. Rev. E 83 (4), 2011 mehr… BibTeX
- Effective parameters determining the information flow in hierarchical biological systems. Bull. Math. Biol. 73 (4), 2011, 706-725 mehr… BibTeX
- Steady-state robustness of qualitative gene regulation networks. Int. J. Robust Nonlin. 21 (15), 2011, 1742-1758 mehr… BibTeX
- An ISA algorithm with unknown group sizes successfully identifies biologically meaningful clusters in metabolomics data. , EUSIPCO, 2011 mehr… BibTeX
- The nature and perception of fluctuations in human musical rhythms. PLoS ONE 6 (10), 2011 mehr… BibTeX
- miTALOS: Analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs. RNA 17 (5), 2011, 809-819 mehr… BibTeX
- Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network. PLoS One 6 (8), 2011 mehr… BibTeX
- Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data. BMC Syst. Biol. 5 (1), 2011 mehr… BibTeX
- From discrete to continuous gene regulation models - a tutorial using the odefy toolbox. In: InTech, 2011, 35-60 mehr… BibTeX
- Huge splicing frequency in human Y chromosomal UTY gene. OMICS 15 (3), 2011, 141-154 mehr… BibTeX
- Exploratory matrix factorization techniques for large scale biomedical data sets. In: Bentham Science Publishers, 2011, 26-47 mehr… BibTeX
- Stability analysis of hybrid stochastic gene regulatory networks. , Elsevier, 2011 mehr… BibTeX
- Discovery of sexual dimorphisms in metabolic and genetic biomarkers. PLoS Genet. 7 (8), 2011 mehr… BibTeX
- Gaussian graphical modeling reveals specific lipid correlations in glioblastoma cells. , SPIE, 2011 mehr… BibTeX
- Dynamic mathematical modeling of IL13-induced signaling in Hodgkin and primary mediastinal B-Cell lymphoma allows prediction of therapeutic targets. Cancer Res. 71 (3), 2011, 693-704 mehr… BibTeX
- MicroRNAs coordinately regulate protein complexes. BMC Syst. Biol. 5, 2011 mehr… BibTeX
- Efficient fluorescence image normalization for time lapse movies. , MIAAB, 2011 mehr… BibTeX
- Theoretical analysis of time-to-peak responses in biological reaction networks. Bull. Math. Biol. 73, 2011, 978-1003 mehr… BibTeX
- Uniqueness of non-Gaussianity-based dimension reduction. IEEE Trans. Signal Process. 59 (9), 2011, 4478 - 4482 mehr… BibTeX
- Complex principal component and correlation structure of 16 yeast genomic variables. Mol. Biol. Evol. 28 (9), 2011, 2501-2512 mehr… BibTeX
- The signal separation evaluation campaign (2007-2010): Achievements and remaining challenges. Signal Process. 92 (8), 2011, 1928-1936 mehr… BibTeX
- Dynamic regimes of random fuzzy logic networks. New J. Phys. 13, 2011 mehr… BibTeX
2010
- Gene regulation at the Mid-Hindbrain Boundary: Study of a mathematical model in the stationary limit. Int. J. Biomath. Biostat. 1 (1), 2010, 9-21 mehr… BibTeX
- The 2010 signal separation evaluation campaign (SiSEC2010): Audio source separation. , Springer, 2010 mehr… BibTeX
- The 2010 signal separation evaluation campaign (SiSEC2010): Biomedical source separation. , Springer, 2010 mehr… BibTeX
- Uncovering the structure of heterogeneus biological data: Fuzzy graph partitioning in the k-partite setting. , Ges. f. Inform., 2010 mehr… BibTeX
- Second-order source separation based on prior knowledge realized in a graph model. , Springer, 2010 mehr… BibTeX
- Which sectors of a modern economy are most central? , ifo Institut für Wirtschaftsforschung e.V., 2010 mehr… BibTeX
- From binary to multivalued to continuous models: The lac operon as a case study. J. Integr. Bioinform. 7 (1), 2010 mehr… BibTeX
- ICA over finite fields. , Springer, 2010 mehr… BibTeX
- Second order subspace analysis and simple decompositions. , Springer, 2010 mehr… BibTeX
- Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs. BMC Bioinformatics 11, 2010 mehr… BibTeX
- MicroRNA loss enhances learning and memory in mice. J. Neurosci. 30 (44), 2010, 14835-14842 mehr… BibTeX
- Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation. BMC Bioinformatics 11, 2010 mehr… BibTeX
- Tissue-specific target analysis of disease-associated microRNAs in human signaling pathways. PLoS ONE 5 (6), 2010 mehr… BibTeX
- The ad coefficient as a descriptive measure of the within-group agreement of ratings. Brit. J. Math. Stat. Psychol. 63 (2), 2010, 341-360 mehr… BibTeX
- Odefy - from discrete to continuous models. BMC Bioinformatics 11, 2010, 1-10 mehr… BibTeX
- Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects. BMC Genomics 11, 2010 mehr… BibTeX
- Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli. PLoS Comput. Biol. 6 (7), 2010 mehr… BibTeX
- MIPS: Curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Res. 39, 2010, D220-D224 mehr… BibTeX
- Robust stability analysis of multi-time scale genetic regulatory networks under parametric uncertainties. , CSREA Press, 2010 mehr… BibTeX
- Robust stability analysis and design under consideration of multiple feedback loops of the tryptophan regulatory network of Escherichia coli. Adv. Exp. Med. Biol. 680, 2010, 189-197 mehr… BibTeX
- Information-theoretic model selection for independent components. , Springer, 2010 mehr… BibTeX
- PhenomiR: A knowledgebase for microRNA expression in diseases and biological processes. Genome Biol. 11 (1), 2010 mehr… BibTeX
- Colored subspace analysis: Dimension reduction based on a signal's autocorrelation structure. IEEE Trans. Circuits Syst. I-Regul. Pap. 57 (7), 2010, 1463-1474 mehr… BibTeX
- Foundations of medical imaging and signal recording. In: MIT Press, 2010, 1-28 mehr… BibTeX
- Robust second-order source separation identifies experimental responses in biomedical imaging. , Springer, 2010 mehr… BibTeX
- The structure of borders in a small world. PLoS ONE 5 (11), 2010 mehr… BibTeX
- Biologically meaningful update rules increase the critical connectivity of generalized Kauffman networks. J. Theor. Biol. 266 (3), 2010, 436-448 mehr… BibTeX
2009
- Estimating hidden influences in metabolic and gene regulatory networks. In: Springer, 2009, 387-394 mehr… BibTeX
- Optimization techniques for data representions with biomedical applications. In: Springer, 2009, 1-38 mehr… BibTeX
- Hierarchical extraction of independent subspaces of unknown dimensions. In: Springer, 2009, 259-266 mehr… BibTeX
- ICA, kernel methods and nonnegativity: New paradigms for dynamical component analysis of fMRI data. Eng. Appl. Artif. Intel. 22 (4-5), 2009, 497-504 mehr… BibTeX
- Hypergraphs and cellular networks. PLoS Comput. Biol. 5 (5), 2009 mehr… BibTeX
- Blind source separation techniques for the decomposition of multiply labeled fluorescence images. Biophys. J. 96 (9), 2009, 3791-3800 mehr… BibTeX
- Soft dimension reduction for ICA by joint diagonalization on the Stiefel manifold. In: Springer, 2009, 354-361 mehr… BibTeX
- Blind decomposition of spectral imaging microscopy: A study on artificial and real test data. In: Springer, 2009, 548-556 mehr… BibTeX
- Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine. Genome Biol. 10 (7), 2009 mehr… BibTeX
- Spatial analysis of expression patterns predicts genetic interactions at the mid-hindbrain boundary. PLoS Comput. Biol. 5 (11), 2009 mehr… BibTeX
- Transforming Boolean models to continuous models: Methodology and application to T-cell receptor signaling. BMC Syst. Biol. 3, 2009 mehr… BibTeX
- Reconstruction of graphs based on random walks. Theor. Comput. Sci. 410 (38-40), 2009, 3826-3838 mehr… BibTeX
2008
- Money Circulation, Trackable Items, and the Emergence of Universal Human Mobility Patterns. IEEE Pervasive Comput. 7 (4), 2008, 28-35 mehr… BibTeX
- Knowledge-based gene expression classification via matrix factorization. Bioinformatics 24 (15), 2008, 1688-1697 mehr… BibTeX
- An evolutionary and structural characterization of mammalian protein complex organization. BMC Genomics 9, 2008 mehr… BibTeX